PyFRAP
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Installing PyFRAP via setup.py
PyFRAP setup.py API
pyfrp.modules package
pyfrp.subclasses package
PyFRAP
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C
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D
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H
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I
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M
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Z
A
adaptRefineInMeshByField() (pyfrp.subclasses.pyfrp_ROI.ROI method)
addAllFields() (pyfrp.modules.pyfrp_gmsh_geometry.minField method)
addAllSurfacesToLoop() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addArc() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addAttractorField() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addBoundaryLayerAroundROI() (pyfrp.subclasses.pyfrp_mesh.mesh method)
addBoundaryLayerAtSurfaces() (pyfrp.subclasses.pyfrp_ROI.ROI method)
addBoundaryLayerField() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addBoxField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
(pyfrp.modules.pyfrp_gmsh_geometry.domain method)
(pyfrp.subclasses.pyfrp_mesh.mesh method)
addBSpline() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addCircleByParameters() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addCorner() (pyfrp.subclasses.pyfrp_ROI.polyROI method)
addCuboidByParameters() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addCylinderByParameters() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addData() (OverrideInstall method)
addEdgeByID() (pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
(pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
addEdgeListByID() (pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
addEmbryo() (pyfrp.subclasses.pyfrp_molecule.molecule method)
addEnclosingVolume() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addFaceByID() (pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
addFaceListByID() (pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
addFieldByID() (pyfrp.modules.pyfrp_gmsh_geometry.minField method)
addFit() (pyfrp.subclasses.pyfrp_embryo.embryo method)
addKineticsToSolution() (in module pyfrp.modules.pyfrp_fit_module)
addLine() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addLineLoop() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addMinField() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addNodeByID() (pyfrp.modules.pyfrp_gmsh_geometry.attractorField method)
(pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
addNodeListByID() (pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
addPathToWinPATHs() (in module pyfrp.modules.pyfrp_misc_module)
addPolygonByParameters() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addPrismByParameters() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addRecentFile() (pyfrp.subclasses.pyfrp_conf.configuration method)
addRectangleByParameters() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_ROI.customROI method)
(pyfrp.subclasses.pyfrp_fit.fit method)
addROIById() (pyfrp.subclasses.pyfrp_fit.fit method)
addROIByName() (pyfrp.subclasses.pyfrp_fit.fit method)
addRuledSurface() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addSquareByParameters() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addSurfaceByID() (pyfrp.modules.pyfrp_gmsh_geometry.surfaceLoop method)
addSurfaceLoop() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addThresholdField() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addToAttractor() (pyfrp.modules.pyfrp_gmsh_geometry.vertex method)
addToBoundaryLayer() (pyfrp.modules.pyfrp_gmsh_geometry.edge method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
(pyfrp.modules.pyfrp_gmsh_geometry.vertex method)
addVertex() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
addVolume() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
adjustImshowRange() (in module pyfrp.modules.pyfrp_plot_module)
analysis (class in pyfrp.subclasses.pyfrp_analysis)
analyzeDataset() (in module pyfrp.modules.pyfrp_img_module)
appDtype() (in module pyfrp.modules.pyfrp_misc_module)
appendCorner() (pyfrp.subclasses.pyfrp_ROI.polyROI method)
applyIdealICs() (in module pyfrp.modules.pyfrp_sim_module)
applyImperfectICs() (in module pyfrp.modules.pyfrp_sim_module)
applyInterpolatedICs() (in module pyfrp.modules.pyfrp_sim_module)
applyParmDic() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
applyRadialICs() (in module pyfrp.modules.pyfrp_sim_module)
applyROIBasedICs() (in module pyfrp.modules.pyfrp_sim_module)
approxBySpline() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
arc (class in pyfrp.modules.pyfrp_gmsh_geometry)
assignIfVal() (in module pyfrp.modules.pyfrp_misc_module)
assignInputVariables() (in module pyfrp.modules.pyfrp_fit_module)
assignOptParms() (pyfrp.subclasses.pyfrp_fit.fit method)
attractorField (class in pyfrp.modules.pyfrp_gmsh_geometry)
B
backupPathFile() (pyfrp.subclasses.pyfrp_conf.configuration method)
bkgdOn() (pyfrp.subclasses.pyfrp_analysis.analysis method)
boundaryLayerField (class in pyfrp.modules.pyfrp_gmsh_geometry)
boxField (class in pyfrp.modules.pyfrp_gmsh_geometry)
bSpline (class in pyfrp.modules.pyfrp_gmsh_geometry)
buildBoundLists() (in module pyfrp.modules.pyfrp_optimization_module)
buildElementDict() (pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
buildEmbryoWizard() (in module pyfrp.modules.pyfrp_misc_module)
C
calcAllTetSidelenghts() (pyfrp.subclasses.pyfrp_mesh.mesh method)
calcTetSidelengths() (in module pyfrp.modules.pyfrp_integration_module)
center2Mid() (pyfrp.subclasses.pyfrp_geometry.geometry method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
centerInImg() (pyfrp.subclasses.pyfrp_geometry.geometry method)
centerOffset() (pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
changePermissions() (OverrideInstall method)
checkCentered() (pyfrp.subclasses.pyfrp_ROI.radialROI method)
checkClosed() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
checkColinear() (in module pyfrp.modules.pyfrp_geometry_module)
checkDataMultiChannel() (in module pyfrp.modules.pyfrp_misc_module)
checkEmbryoNames() (pyfrp.subclasses.pyfrp_molecule.molecule method)
checkIdExists() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
checkIfGmshBin() (in module pyfrp.modules.pyfrp_misc_module)
checkInput() (in module pyfrp.modules.pyfrp_fit_module)
(pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
checkInsideCircle() (in module pyfrp.modules.pyfrp_idx_module)
checkInsideImg() (in module pyfrp.modules.pyfrp_idx_module)
checkInsidePoly() (in module pyfrp.modules.pyfrp_idx_module)
checkInsidePolyVec() (in module pyfrp.modules.pyfrp_idx_module)
checkInsideRectangle() (in module pyfrp.modules.pyfrp_idx_module)
checkInsideSquare() (in module pyfrp.modules.pyfrp_idx_module)
checkMultiChannel() (in module pyfrp.modules.pyfrp_misc_module)
checkPaths() (in module pyfrp.modules.pyfrp_misc_module)
checkPinned() (pyfrp.subclasses.pyfrp_fit.fit method)
checkQuad() (in module pyfrp.modules.pyfrp_idx_module)
checkQuadReducable() (pyfrp.subclasses.pyfrp_embryo.embryo method)
checkROIIdxs() (pyfrp.subclasses.pyfrp_embryo.embryo method)
checkSimulated() (pyfrp.subclasses.pyfrp_fit.fit method)
checkSquareCenteredFromInd() (in module pyfrp.modules.pyfrp_idx_module)
checkSquareSize() (in module pyfrp.modules.pyfrp_idx_module)
checkSquCentered() (in module pyfrp.modules.pyfrp_idx_module)
checkSymmetry() (pyfrp.subclasses.pyfrp_ROI.ROI method)
checkXYInside() (pyfrp.subclasses.pyfrp_ROI.customROI method)
(pyfrp.subclasses.pyfrp_ROI.polyROI method)
(pyfrp.subclasses.pyfrp_ROI.polySliceROI method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_ROI.radialSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.sliceROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
(pyfrp.subclasses.pyfrp_ROI.squareSliceROI method)
checkZInside() (pyfrp.subclasses.pyfrp_ROI.ROI method)
cleanUp() (in module pyfrp.modules.pyfrp_IO_module)
cleanUpImageFiles() (in module pyfrp.modules.pyfrp_misc_module)
cleanUpUnusedEdges() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
clearAllAttributes() (pyfrp.subclasses.pyfrp_embryo.embryo method)
clearAllEmbryos() (pyfrp.subclasses.pyfrp_molecule.molecule method)
clearCenter() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
clearCenterMarker() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
clearRadius() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
closeFigure() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
closerLabels() (in module pyfrp.modules.pyfrp_plot_module)
compareArrays() (in module pyfrp.modules.pyfrp_misc_module)
compareFitsByAIC() (in module pyfrp.modules.pyfrp_stats_module)
(pyfrp.subclasses.pyfrp_embryo.embryo method)
compareFitsByCorrAIC() (in module pyfrp.modules.pyfrp_stats_module)
(pyfrp.subclasses.pyfrp_embryo.embryo method)
compareICInterpolation() (pyfrp.subclasses.pyfrp_simulation.simulation method)
compareObjAttr() (in module pyfrp.modules.pyfrp_misc_module)
compareROIs() (in module pyfrp.modules.pyfrp_misc_module)
compareVectors() (in module pyfrp.modules.pyfrp_misc_module)
complValsFast() (in module pyfrp.modules.pyfrp_misc_module)
complValsSimple() (in module pyfrp.modules.pyfrp_misc_module)
computeAIC() (in module pyfrp.modules.pyfrp_stats_module)
computeAkaikeWeights() (in module pyfrp.modules.pyfrp_stats_module)
computeAngle() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
computeAngleOffset() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
computeBall() (pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
computeBkgd() (in module pyfrp.modules.pyfrp_fit_module)
(pyfrp.subclasses.pyfrp_embryo.embryo method)
computeBkgdMask() (pyfrp.subclasses.pyfrp_analysis.analysis method)
computeConvFact() (pyfrp.subclasses.pyfrp_embryo.embryo method)
computeCorrAIC() (in module pyfrp.modules.pyfrp_stats_module)
computeDome() (pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
computeEquFactors() (in module pyfrp.modules.pyfrp_fit_module)
computeExtIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
computeExtMask() (pyfrp.subclasses.pyfrp_ROI.ROI method)
computeFitLikelihoodProfiles() (in module pyfrp.modules.pyfrp_fit_module)
computeFitRsq() (in module pyfrp.modules.pyfrp_stats_module)
computeFlatMask() (in module pyfrp.modules.pyfrp_img_module)
computeFlatteningMask() (pyfrp.subclasses.pyfrp_analysis.analysis method)
computeIdealFRAPPinVals() (pyfrp.subclasses.pyfrp_embryo.embryo method)
computeIdxs() (pyfrp.subclasses.pyfrp_ROI.ROI method)
computeImgIdx() (pyfrp.subclasses.pyfrp_ROI.polyROI method)
(pyfrp.subclasses.pyfrp_ROI.polySliceROI method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_ROI.radialSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.sliceROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
(pyfrp.subclasses.pyfrp_ROI.squareSliceROI method)
computeImgMask() (pyfrp.subclasses.pyfrp_ROI.ROI method)
computeInterpolatedICImg() (pyfrp.subclasses.pyfrp_simulation.simulation method)
computeInterpolatedSolutionToImg() (pyfrp.subclasses.pyfrp_simulation.simulation method)
computeLikelihoodProfile() (in module pyfrp.modules.pyfrp_fit_module)
computeLogLikelihood() (in module pyfrp.modules.pyfrp_stats_module)
computeMeanImg() (in module pyfrp.modules.pyfrp_img_module)
computeMeshIdx() (pyfrp.subclasses.pyfrp_ROI.polyROI method)
(pyfrp.subclasses.pyfrp_ROI.polySliceROI method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_ROI.radialSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.sliceROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
(pyfrp.subclasses.pyfrp_ROI.squareSliceROI method)
computeNorm() (in module pyfrp.modules.pyfrp_fit_module)
(pyfrp.subclasses.pyfrp_embryo.embryo method)
computeNormal() (in module pyfrp.modules.pyfrp_geometry_module)
computeNumExt() (pyfrp.subclasses.pyfrp_ROI.ROI method)
computePinVals() (in module pyfrp.modules.pyfrp_fit_module)
(pyfrp.subclasses.pyfrp_embryo.embryo method)
computePOffset() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
computePreMask() (pyfrp.subclasses.pyfrp_analysis.analysis method)
computeRadialProfile() (in module pyfrp.modules.pyfrp_img_module)
computeRadius() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
computeRadiusFromCoordinate() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
computeRadiusFromSliceHeight() (pyfrp.subclasses.pyfrp_geometry.cone method)
computeROIIdxs() (pyfrp.subclasses.pyfrp_embryo.embryo method)
computeSliceHeightFromRadius() (pyfrp.subclasses.pyfrp_geometry.cone method)
computeSSD() (in module pyfrp.modules.pyfrp_stats_module)
computeStats() (pyfrp.subclasses.pyfrp_fit.fit method)
computeXYExtend() (pyfrp.subclasses.pyfrp_ROI.customROI method)
(pyfrp.subclasses.pyfrp_ROI.polyROI method)
(pyfrp.subclasses.pyfrp_ROI.polySliceROI method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_ROI.radialSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.sliceROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
(pyfrp.subclasses.pyfrp_ROI.squareSliceROI method)
computeZExtend() (pyfrp.subclasses.pyfrp_ROI.sliceROI method)
cone (class in pyfrp.subclasses.pyfrp_geometry)
configuration (class in pyfrp.subclasses.pyfrp_conf)
constrObjFunc() (in module pyfrp.modules.pyfrp_optimization_module)
convertMathExpr() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
convSkio2NP() (in module pyfrp.modules.pyfrp_img_module)
copy() (pyfrp.subclasses.pyfrp_embryo.embryo method)
copyAndRenameFile() (in module pyfrp.modules.pyfrp_IO_module)
copyIdxs() (pyfrp.subclasses.pyfrp_ROI.ROI method)
copyIntoTempFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
copyListOfFiles() (in module pyfrp.modules.pyfrp_misc_module)
copyMeshFiles() (in module pyfrp.modules.pyfrp_IO_module)
copyPathFileToDefaultLocation() (pyfrp.subclasses.pyfrp_conf.configuration method)
createCanvas() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
custom (class in pyfrp.subclasses.pyfrp_geometry)
customROI (class in pyfrp.subclasses.pyfrp_ROI)
cutTvec() (in module pyfrp.modules.pyfrp_fit_module)
cylinder (class in pyfrp.subclasses.pyfrp_geometry)
cylinderQuad (class in pyfrp.subclasses.pyfrp_geometry)
D
decodeEuclideanBase() (in module pyfrp.modules.pyfrp_geometry_module)
decodeTyp() (pyfrp.modules.pyfrp_gmsh_geometry.edge method)
decreaseRadius() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
delete() (pyfrp.modules.pyfrp_gmsh_geometry.edge method)
(pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
deleteFit() (pyfrp.subclasses.pyfrp_embryo.embryo method)
dict2string() (in module pyfrp.modules.pyfrp_misc_module)
dist() (in module pyfrp.modules.pyfrp_img_module)
domain (class in pyfrp.modules.pyfrp_gmsh_geometry)
downloadFiji() (OverrideInstall method)
downloadFijiLinux() (OverrideInstall method)
downloadFijiOSX() (OverrideInstall method)
downloadFijiWin() (OverrideInstall method)
downloadGmsh() (OverrideInstall method)
downloadGmshLinux() (OverrideInstall method)
downloadGmshOSX() (OverrideInstall method)
downloadGmshWin() (OverrideInstall method)
downscaleKinetics() (in module pyfrp.modules.pyfrp_fit_module)
draw() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
(pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
(pyfrp.modules.pyfrp_gmsh_geometry.domain method)
(pyfrp.modules.pyfrp_gmsh_geometry.line method)
(pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
(pyfrp.modules.pyfrp_gmsh_geometry.vertex method)
drawCenter() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
drawCenterMarker() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
drawMPL() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
(pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
(pyfrp.modules.pyfrp_gmsh_geometry.line method)
(pyfrp.modules.pyfrp_gmsh_geometry.vertex method)
drawRadius() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
drawVTK() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
(pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
(pyfrp.modules.pyfrp_gmsh_geometry.line method)
(pyfrp.modules.pyfrp_gmsh_geometry.vertex method)
drawVTKArc() (in module pyfrp.modules.pyfrp_vtk_module)
drawVTKLine() (in module pyfrp.modules.pyfrp_vtk_module)
drawVTKPoint() (in module pyfrp.modules.pyfrp_vtk_module)
drawVTKPolyLine() (in module pyfrp.modules.pyfrp_vtk_module)
drawVTKSphere() (in module pyfrp.modules.pyfrp_vtk_module)
drawVTKText() (in module pyfrp.modules.pyfrp_vtk_module)
drawVTKVertex() (in module pyfrp.modules.pyfrp_vtk_module)
E
edge (class in pyfrp.modules.pyfrp_gmsh_geometry)
embryo (class in pyfrp.subclasses.pyfrp_embryo)
emptyIdxs() (pyfrp.subclasses.pyfrp_ROI.ROI method)
enumeratedName() (in module pyfrp.modules.pyfrp_misc_module)
equalize() (in module pyfrp.modules.pyfrp_fit_module)
extract() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
extractCZI() (in module pyfrp.modules.pyfrp_img_module)
extractEmbryos2Files() (pyfrp.subclasses.pyfrp_molecule.molecule method)
extractLSM() (in module pyfrp.modules.pyfrp_img_module)
extractMicroscope() (in module pyfrp.modules.pyfrp_img_module)
F
field (class in pyfrp.modules.pyfrp_gmsh_geometry)
fillEndStacks() (in module pyfrp.modules.pyfrp_zstack_module)
findArtist() (in module pyfrp.modules.pyfrp_plot_module)
findComment() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
findDateString() (in module pyfrp.modules.pyfrp_misc_module)
findFn() (in module pyfrp.modules.pyfrp_misc_module)
findIncluded() (pyfrp.subclasses.pyfrp_ROI.ROI method)
findIntString() (in module pyfrp.modules.pyfrp_misc_module)
findMinEquFacts() (in module pyfrp.modules.pyfrp_fit_module)
findMinOffset() (in module pyfrp.modules.pyfrp_img_module)
findPreimage() (in module pyfrp.modules.pyfrp_misc_module)
findProblematicNormingPixels() (in module pyfrp.modules.pyfrp_img_module)
fit (class in pyfrp.subclasses.pyfrp_fit)
fix() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
fixAllLoops() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
fixAllSurfaces() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
fixedThresh() (in module pyfrp.modules.pyfrp_img_module)
fixFilePaths() (pyfrp.subclasses.pyfrp_embryo.embryo method)
fixNegValues() (in module pyfrp.modules.pyfrp_sim_module)
fixPath() (in module pyfrp.modules.pyfrp_misc_module)
flattenImg() (in module pyfrp.modules.pyfrp_img_module)
flattenOn() (pyfrp.subclasses.pyfrp_analysis.analysis method)
flipBeforeProcessOn() (pyfrp.subclasses.pyfrp_analysis.analysis method)
flipCoordinate() (in module pyfrp.modules.pyfrp_geometry_module)
flipQuad() (in module pyfrp.modules.pyfrp_img_module)
forceMinMeshDensityInROI() (pyfrp.subclasses.pyfrp_mesh.mesh method)
FRAPBoundarySelector (class in pyfrp.modules.pyfrp_plot_module)
FRAPFitting() (in module pyfrp.modules.pyfrp_fit_module)
FRAPObjFunc() (in module pyfrp.modules.pyfrp_fit_module)
fuse() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
G
gaussianFilter() (in module pyfrp.modules.pyfrp_img_module)
gaussianOn() (pyfrp.subclasses.pyfrp_analysis.analysis method)
genAsOpenscad() (pyfrp.subclasses.pyfrp_geometry.cone method)
(pyfrp.subclasses.pyfrp_ROI.customROI method)
(pyfrp.subclasses.pyfrp_ROI.polyROI method)
(pyfrp.subclasses.pyfrp_ROI.polySliceROI method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_ROI.radialSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.sliceROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
(pyfrp.subclasses.pyfrp_ROI.squareSliceROI method)
(pyfrp.subclasses.pyfrp_geometry.cylinder method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
genAsOpenscadInGeometry() (pyfrp.subclasses.pyfrp_ROI.ROI method)
genDefaultProcess() (pyfrp.subclasses.pyfrp_analysis.analysis method)
genDefaultROIs() (pyfrp.subclasses.pyfrp_embryo.embryo method)
genFakeIC() (in module pyfrp.modules.pyfrp_img_module)
genFakeSigmoidIC() (in module pyfrp.modules.pyfrp_img_module)
genGmshDomain() (pyfrp.subclasses.pyfrp_ROI.polySliceROI method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
(pyfrp.subclasses.pyfrp_ROI.radialSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.squareSliceROI method)
genMergeGeoFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
genMesh() (pyfrp.subclasses.pyfrp_mesh.mesh method)
genMeshFile() (pyfrp.subclasses.pyfrp_ROI.ROI method)
genMinBkgd() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
geometry (class in pyfrp.subclasses.pyfrp_geometry)
geometry2Full() (pyfrp.subclasses.pyfrp_embryo.embryo method)
geometry2Quad() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getAddRimImg() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getAllFieldsOfType() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getAllIDsOfType() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getAllIdxImg() (in module pyfrp.modules.pyfrp_idx_module)
getAllIdxs() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getAllMaxID() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getAllObjectsWithProp() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getAllObjWithAttrVal() (in module pyfrp.modules.pyfrp_misc_module)
getAllSubElements() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
getAngle() (in module pyfrp.modules.pyfrp_geometry_module)
(pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getAngleOffset() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getArea() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getArrayDetailsString() (in module pyfrp.modules.pyfrp_term_module)
getAvgConc() (in module pyfrp.modules.pyfrp_integration_module)
getBackup2File() (pyfrp.subclasses.pyfrp_conf.configuration method)
getBackup2Memory() (pyfrp.subclasses.pyfrp_conf.configuration method)
getBkgdField() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getBkgdFieldID() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getBounds() (pyfrp.subclasses.pyfrp_fit.fit method)
getBruteInitDArray() (pyfrp.subclasses.pyfrp_fit.fit method)
getCenter() (pyfrp.subclasses.pyfrp_geometry.geometry method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
getCenterOfMass() (in module pyfrp.modules.pyfrp_idx_module)
(pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
(pyfrp.subclasses.pyfrp_ROI.polyROI method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
getCircleIdxImg() (in module pyfrp.modules.pyfrp_idx_module)
getCircleIdxMesh() (in module pyfrp.modules.pyfrp_idx_module)
getColor() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getCommonExtendedPixels() (in module pyfrp.modules.pyfrp_idx_module)
getCommonRange() (in module pyfrp.modules.pyfrp_img_module)
getCommonXYExtend() (in module pyfrp.modules.pyfrp_idx_module)
getConcRim() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getConfDir() (in module pyfrp.modules.pyfrp_misc_module)
getContours() (in module pyfrp.modules.pyfrp_zstack_module)
getCopy() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
getCorners() (pyfrp.subclasses.pyfrp_ROI.polyROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
getCorrespondingGeoFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getCutOffT() (pyfrp.subclasses.pyfrp_fit.fit method)
getD() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getDataEnc() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getDataFolder() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getDataFT() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getDataOffset() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getDataResMu() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getDataResPx() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getDataVec() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getdataVecFitted() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getDegr() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getDirection() (pyfrp.modules.pyfrp_gmsh_geometry.line method)
getDomain() (pyfrp.modules.pyfrp_gmsh_geometry.edge method)
(pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
getEdgeById() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getEdgeByVertices() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getEdges() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
getEmbryo() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
(pyfrp.subclasses.pyfrp_geometry.geometry method)
getEmbryoByName() (pyfrp.subclasses.pyfrp_molecule.molecule method)
getEncapsulatingBox() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getEqu() (pyfrp.subclasses.pyfrp_fit.fit method)
getExtend() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
(pyfrp.subclasses.pyfrp_geometry.geometry method)
getExtendedPixelsCircle() (in module pyfrp.modules.pyfrp_idx_module)
getExtendedPixelsPolygon() (in module pyfrp.modules.pyfrp_idx_module)
getExtendedPixelsRectangle() (in module pyfrp.modules.pyfrp_idx_module)
getExtendedPixelsSquare() (in module pyfrp.modules.pyfrp_idx_module)
getExtImgIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getExtMask() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getFieldByComment() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getFieldById() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getFijiBin() (in module pyfrp.modules.pyfrp_misc_module)
getFileList() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getFirstVertex() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
(pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
(pyfrp.modules.pyfrp_gmsh_geometry.line method)
getFitByName() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getFitCutOffT() (pyfrp.subclasses.pyfrp_fit.fit method)
getFitDegr() (pyfrp.subclasses.pyfrp_fit.fit method)
getFitPinned() (pyfrp.subclasses.pyfrp_fit.fit method)
getFitProd() (pyfrp.subclasses.pyfrp_fit.fit method)
getFittedParameterNames() (pyfrp.subclasses.pyfrp_fit.fit method)
getFittedVec() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getFnBkgd() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getFnFlatten() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getFnGeo() (pyfrp.subclasses.pyfrp_geometry.geometry method)
getFnMesh() (pyfrp.subclasses.pyfrp_mesh.mesh method)
getFnPre() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getFrameInterval() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getFreeROIId() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getFunctionCall() (in module pyfrp.modules.pyfrp_term_module)
getGaussianSigma() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getGeometry() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getGmshBin() (in module pyfrp.modules.pyfrp_gmsh_module)
getGUIDir() (in module pyfrp.modules.pyfrp_misc_module)
getHeight() (pyfrp.subclasses.pyfrp_geometry.cone method)
(pyfrp.subclasses.pyfrp_ROI.sliceROI method)
(pyfrp.subclasses.pyfrp_geometry.cylinder method)
getICimg() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getICImgSmoothness() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getICSmoothness() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getId() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getID() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
getId() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getIdxOfNLargest() (in module pyfrp.modules.pyfrp_misc_module)
getImagingHeight() (pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
getImagingRadius() (pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
getImgIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getImgMask() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getImgSmoothness() (in module pyfrp.modules.pyfrp_img_module)
getInnerRadius() (pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
getInterpolationError() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
getIntRangeDtype() (in module pyfrp.modules.pyfrp_img_module)
getIterations() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getKineticTimeScale() (pyfrp.subclasses.pyfrp_fit.fit method)
getLargestIDOfType() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getLastNonEmptyLine() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getLastVertex() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
(pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
(pyfrp.modules.pyfrp_gmsh_geometry.line method)
getLBD() (pyfrp.subclasses.pyfrp_fit.fit method)
getLBDegr() (pyfrp.subclasses.pyfrp_fit.fit method)
getLBProd() (pyfrp.subclasses.pyfrp_fit.fit method)
getLineLoopById() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getLinesByID() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getListDetailsString() (in module pyfrp.modules.pyfrp_term_module)
getLowerRadius() (pyfrp.subclasses.pyfrp_geometry.cone method)
getMacroDir() (in module pyfrp.modules.pyfrp_misc_module)
getMasterROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getMasterROIIdx() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getMaxExtendPlane() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getMaxfun() (pyfrp.subclasses.pyfrp_fit.fit method)
getMaxGeoID() (pyfrp.subclasses.pyfrp_geometry.geometry method)
getMaxID() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getMaxNodeDistance() (pyfrp.subclasses.pyfrp_mesh.mesh method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
getMaxRangeChannel() (in module pyfrp.modules.pyfrp_img_module)
getMeanIntensitiesImgs() (in module pyfrp.modules.pyfrp_img_module)
getMedianRadius() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getMesh() (pyfrp.subclasses.pyfrp_mesh.mesh method)
getMeshDensity() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getMeshfilesDir() (in module pyfrp.modules.pyfrp_misc_module)
getMeshIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getMeshIdxExtend() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getMeshIdxXExtend() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getMeshIdxYExtend() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getMeshIdxZExtend() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getMiddle() (pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
(pyfrp.modules.pyfrp_gmsh_geometry.line method)
getModulesDir() (in module pyfrp.modules.pyfrp_misc_module)
getMouseInput() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
getName() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
(pyfrp.subclasses.pyfrp_fit.fit method)
(pyfrp.subclasses.pyfrp_molecule.molecule method)
getNBkgd() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getNewId() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getNFlatten() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getNFrames() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getNImgPxs() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getNLargest() (in module pyfrp.modules.pyfrp_misc_module)
getNMeshNodes() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getNNodes() (pyfrp.subclasses.pyfrp_mesh.mesh method)
getNormal() (pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
getNormVec() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getNParmsFitted() (pyfrp.subclasses.pyfrp_fit.fit method)
getNPre() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getNumExt() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getOffset() (pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
getOpenscadBin() (in module pyfrp.modules.pyfrp_misc_module)
getOpenscadZExtend() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getOpt() (built-in function)
getOptimalAllROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getOptimalOffset() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getOptions() (built-in function)
getOptMeth() (pyfrp.subclasses.pyfrp_fit.fit method)
getOptTol() (pyfrp.subclasses.pyfrp_fit.fit method)
getOptTvecSim() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getOrthogonal2Plane() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getOuterRadius() (pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
getPath() (in module pyfrp.modules.pyfrp_misc_module)
getPathFile() (in module pyfrp.modules.pyfrp_misc_module)
(pyfrp.subclasses.pyfrp_conf.configuration method)
getPlaneMidCoordinate() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getPlotHidden() (pyfrp.subclasses.pyfrp_conf.configuration method)
getPlotVec() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getPointOnArc() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getPolyIdxImg() (in module pyfrp.modules.pyfrp_idx_module)
getPolyIdxMesh() (in module pyfrp.modules.pyfrp_idx_module)
getProcess() (pyfrp.subclasses.pyfrp_analysis.analysis method)
getProd() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getPropHidden() (pyfrp.subclasses.pyfrp_conf.configuration method)
getPubParms() (in module pyfrp.modules.pyfrp_plot_module)
getRadius() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_geometry.cylinder method)
(pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
getRadiusScale() (pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
getRandomColor() (in module pyfrp.modules.pyfrp_plot_module)
getRealZExend() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getRecentFiles() (pyfrp.subclasses.pyfrp_conf.configuration method)
getRectangleIdxImg() (in module pyfrp.modules.pyfrp_idx_module)
getRectangleIdxMesh() (in module pyfrp.modules.pyfrp_idx_module)
getResults() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
getRimConc() (in module pyfrp.modules.pyfrp_img_module)
getRimFactorByPx() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getROIById() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getROIByName() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getROIHeight() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getROIIdx() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getROIs() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getROIsFitted() (pyfrp.subclasses.pyfrp_fit.fit method)
getROIsIncluded() (pyfrp.subclasses.pyfrp_ROI.customROI method)
getRotMatrix() (in module pyfrp.modules.pyfrp_geometry_module)
getRuledSurfaceById() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getRuledSurfacesByNormal() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getSaveSim() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getSaveTrack() (pyfrp.subclasses.pyfrp_fit.fit method)
getSideLength() (pyfrp.subclasses.pyfrp_ROI.squareROI method)
getSideLengthX() (pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
getSideLengthY() (pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
getSimConc() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getSimulation() (pyfrp.subclasses.pyfrp_mesh.mesh method)
getSimVec() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getSliceBottom() (pyfrp.subclasses.pyfrp_ROI.sliceROI method)
getSliceIdxMesh() (in module pyfrp.modules.pyfrp_idx_module)
getSolutionVariableSmoothness() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getSolver() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getSortedFileList() (in module pyfrp.modules.pyfrp_misc_module)
getSquareIdxImg() (in module pyfrp.modules.pyfrp_idx_module)
getSquareIdxMesh() (in module pyfrp.modules.pyfrp_idx_module)
getSubclassesDir() (in module pyfrp.modules.pyfrp_misc_module)
getSubElements() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
(pyfrp.modules.pyfrp_gmsh_geometry.attractorField method)
(pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
(pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
(pyfrp.modules.pyfrp_gmsh_geometry.boxField method)
(pyfrp.modules.pyfrp_gmsh_geometry.field method)
(pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
(pyfrp.modules.pyfrp_gmsh_geometry.line method)
(pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.minField method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
(pyfrp.modules.pyfrp_gmsh_geometry.surfaceLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.thresholdField method)
(pyfrp.modules.pyfrp_gmsh_geometry.volume method)
getSurfaceLoopById() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getTEnd() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getTermHidden() (pyfrp.subclasses.pyfrp_conf.configuration method)
getTolerance() (pyfrp.subclasses.pyfrp_simulation.simulation method)
getTStart() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getTvecCutIndex() (in module pyfrp.modules.pyfrp_fit_module)
getTvecData() (pyfrp.subclasses.pyfrp_embryo.embryo method)
getTyp() (pyfrp.modules.pyfrp_gmsh_geometry.edge method)
(pyfrp.subclasses.pyfrp_geometry.geometry method)
getType() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
getTypeList() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
getTypeListName() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
getUBD() (pyfrp.subclasses.pyfrp_fit.fit method)
getUBDegr() (pyfrp.subclasses.pyfrp_fit.fit method)
getUBProd() (pyfrp.subclasses.pyfrp_fit.fit method)
getUpperRadius() (pyfrp.subclasses.pyfrp_geometry.cone method)
getUseForRim() (pyfrp.subclasses.pyfrp_ROI.ROI method)
getVals() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
getVcenter() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getVend() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getVertexById() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getVertexByX() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getVertices() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
getVolSizePx() (pyfrp.subclasses.pyfrp_mesh.mesh method)
getVolume() (pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
getVolumeById() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
getVstart() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getVTKActor() (in module pyfrp.modules.pyfrp_vtk_module)
getVTKArc() (in module pyfrp.modules.pyfrp_vtk_module)
getVTKLine() (in module pyfrp.modules.pyfrp_vtk_module)
getVTKOutput() (in module pyfrp.modules.pyfrp_vtk_module)
getVTKPolyDataMapper() (in module pyfrp.modules.pyfrp_vtk_module)
getVTKPolyLine() (in module pyfrp.modules.pyfrp_vtk_module)
getVTKSphere() (in module pyfrp.modules.pyfrp_vtk_module)
getWidth() (pyfrp.subclasses.pyfrp_ROI.sliceROI method)
getX0() (pyfrp.subclasses.pyfrp_fit.fit method)
getX0D() (pyfrp.subclasses.pyfrp_fit.fit method)
getX0Degr() (pyfrp.subclasses.pyfrp_fit.fit method)
getX0Equ() (pyfrp.subclasses.pyfrp_fit.fit method)
getX0Prod() (pyfrp.subclasses.pyfrp_fit.fit method)
getXcenter() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getXend() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getXstart() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
getXYExtend() (pyfrp.subclasses.pyfrp_geometry.cone method)
(pyfrp.subclasses.pyfrp_geometry.cylinder method)
(pyfrp.subclasses.pyfrp_geometry.geometry method)
(pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
getZExtend() (pyfrp.subclasses.pyfrp_geometry.cone method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
(pyfrp.subclasses.pyfrp_geometry.cylinder method)
(pyfrp.subclasses.pyfrp_geometry.geometry method)
(pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
gmshElement (class in pyfrp.modules.pyfrp_gmsh_geometry)
H
hasBkgdField() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
hasCommonEdge() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
hasSameNormal() (pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
I
idx2QuadImg() (in module pyfrp.modules.pyfrp_idx_module)
idxs2Full() (pyfrp.subclasses.pyfrp_ROI.ROI method)
idxs2Quad() (pyfrp.subclasses.pyfrp_ROI.ROI method)
imgHist() (in module pyfrp.modules.pyfrp_img_module)
importMeshFromFile() (pyfrp.subclasses.pyfrp_mesh.mesh method)
importVTKFile() (pyfrp.subclasses.pyfrp_mesh.mesh method)
inArc() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
includedInField() (pyfrp.modules.pyfrp_gmsh_geometry.edge method)
includedInLoop() (pyfrp.modules.pyfrp_gmsh_geometry.edge method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
includedInSurface() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
includedInThresholdField() (pyfrp.modules.pyfrp_gmsh_geometry.attractorField method)
increaseRadius() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
incrementAllIDs() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
incrementID() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
incrementIDs() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
ind2mask() (in module pyfrp.modules.pyfrp_idx_module)
initBkgdField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
initBox() (pyfrp.modules.pyfrp_gmsh_geometry.boxField method)
initEdges() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
initField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
initFieldsList() (pyfrp.modules.pyfrp_gmsh_geometry.minField method)
initLineLoop() (pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
initNodesList() (pyfrp.modules.pyfrp_gmsh_geometry.attractorField method)
initOptions() (OverrideInstall method)
initSurfaces() (pyfrp.modules.pyfrp_gmsh_geometry.surfaceLoop method)
initVertices() (pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
insertEdge() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
insertEdgeByID() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
insertElement() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
insertField() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
insertLineLoop() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
insertRuledSurface() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
insertSurfaceByID() (pyfrp.modules.pyfrp_gmsh_geometry.surfaceLoop method)
insertSurfaceLoop() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
insertVertex() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
insertVolume() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
interpolateContourGaps() (in module pyfrp.modules.pyfrp_zstack_module)
interpolateSolution() (in module pyfrp.modules.pyfrp_fit_module)
is3DAxes() (in module pyfrp.modules.pyfrp_plot_module)
isAnalyzed() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
isBkgdField() (pyfrp.modules.pyfrp_gmsh_geometry.field method)
isCoplanar() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
isFitted() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
(pyfrp.subclasses.pyfrp_fit.fit method)
isLogTimeScale() (pyfrp.subclasses.pyfrp_simulation.simulation method)
isMaster() (pyfrp.subclasses.pyfrp_ROI.ROI method)
isMergeFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
isSimulated() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
K
keyPressed() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
L
leastCommonSubstring() (in module pyfrp.modules.pyfrp_misc_module)
lenRange() (in module pyfrp.modules.pyfrp_misc_module)
lin2winPath() (in module pyfrp.modules.pyfrp_misc_module)
line (class in pyfrp.modules.pyfrp_gmsh_geometry)
lineLoop (class in pyfrp.modules.pyfrp_gmsh_geometry)
listROIs() (pyfrp.subclasses.pyfrp_embryo.embryo method)
loadDataImg() (pyfrp.subclasses.pyfrp_embryo.embryo method)
loadEmbryo() (in module pyfrp.modules.pyfrp_IO_module)
loadFromPickle() (in module pyfrp.modules.pyfrp_IO_module)
loadImg() (in module pyfrp.modules.pyfrp_img_module)
loadMolecule() (in module pyfrp.modules.pyfrp_IO_module)
M
makeAdditionalDataFolders() (OverrideInstall method)
makeEmbryoFolderStruct() (in module pyfrp.modules.pyfrp_misc_module)
makeExeFolder() (OverrideInstall method)
makeFittingLevels() (in module pyfrp.modules.pyfrp_plot_module)
makeGeometryPlot() (in module pyfrp.modules.pyfrp_plot_module)
makeQuadReducable() (pyfrp.subclasses.pyfrp_embryo.embryo method)
makeReducable() (pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
makeSubplot() (in module pyfrp.modules.pyfrp_plot_module)
makeVTKCanvas() (in module pyfrp.modules.pyfrp_vtk_module)
mapOntoImgs() (pyfrp.subclasses.pyfrp_simulation.simulation method)
mask2ind() (in module pyfrp.modules.pyfrp_idx_module)
maskMeshByDistance() (in module pyfrp.modules.pyfrp_idx_module)
matchImgIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
matchMeshIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
matchVals() (in module pyfrp.modules.pyfrp_misc_module)
meanConc() (in module pyfrp.modules.pyfrp_img_module)
meanExtConc() (in module pyfrp.modules.pyfrp_img_module)
medianFilter() (in module pyfrp.modules.pyfrp_img_module)
medianOn() (pyfrp.subclasses.pyfrp_analysis.analysis method)
merge() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
mergeMeshes() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
mergeROIs() (pyfrp.subclasses.pyfrp_ROI.customROI method)
mesh (class in pyfrp.subclasses.pyfrp_mesh)
minField (class in pyfrp.modules.pyfrp_gmsh_geometry)
mkdir() (in module pyfrp.modules.pyfrp_misc_module)
modIdx() (in module pyfrp.modules.pyfrp_misc_module)
molecule (class in pyfrp.subclasses.pyfrp_molecule)
moveCorner() (pyfrp.subclasses.pyfrp_ROI.polyROI method)
moveDown() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
moveGeoFile() (pyfrp.subclasses.pyfrp_geometry.geometry method)
moveImageFiles() (in module pyfrp.modules.pyfrp_misc_module)
moveLeft() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
moveListOfFiles() (in module pyfrp.modules.pyfrp_misc_module)
moveRight() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
moveUp() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
N
nearestNeighbour3D() (in module pyfrp.modules.pyfrp_idx_module)
newAnalysis() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newCustomROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newellsMethod() (in module pyfrp.modules.pyfrp_geometry_module)
newEmbryo() (pyfrp.subclasses.pyfrp_molecule.molecule method)
newFit() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newPolyROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newPolySliceROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newRadialROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newRadialSliceROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newRectangleROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newRectangleSliceROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newSimulation() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newSliceROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newSquareROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
newSquareSliceROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
normalByCross() (in module pyfrp.modules.pyfrp_geometry_module)
normalToPlane() (pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
normImg() (in module pyfrp.modules.pyfrp_img_module)
normOn() (pyfrp.subclasses.pyfrp_analysis.analysis method)
O
objAttr2Dict() (in module pyfrp.modules.pyfrp_misc_module)
objAttrToList() (in module pyfrp.modules.pyfrp_misc_module)
optimalAllROI() (pyfrp.subclasses.pyfrp_geometry.cone method)
(pyfrp.subclasses.pyfrp_geometry.cylinder method)
(pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
otsuImageJ() (in module pyfrp.modules.pyfrp_img_module)
overlapSubSampleError() (in module pyfrp.modules.pyfrp_stats_module)
overlapSubSampleSelect() (in module pyfrp.modules.pyfrp_stats_module)
OverrideInstall (built-in class)
P
parameterStats() (in module pyfrp.modules.pyfrp_stats_module)
parm2Process() (pyfrp.subclasses.pyfrp_analysis.analysis method)
pinAllROIs() (pyfrp.subclasses.pyfrp_embryo.embryo method)
pinAllTS() (pyfrp.subclasses.pyfrp_ROI.ROI method)
pinConc() (in module pyfrp.modules.pyfrp_fit_module)
pinDataTS() (pyfrp.subclasses.pyfrp_ROI.ROI method)
pinSimTS() (pyfrp.subclasses.pyfrp_ROI.ROI method)
plotAllData() (pyfrp.subclasses.pyfrp_embryo.embryo method)
plotAllDataPinned() (pyfrp.subclasses.pyfrp_embryo.embryo method)
plotAllSim() (pyfrp.subclasses.pyfrp_embryo.embryo method)
plotAllSimPinned() (pyfrp.subclasses.pyfrp_embryo.embryo method)
plotCellCenters() (pyfrp.subclasses.pyfrp_mesh.mesh method)
plotData() (pyfrp.subclasses.pyfrp_ROI.ROI method)
plotDataPinned() (pyfrp.subclasses.pyfrp_ROI.ROI method)
plotDensity() (pyfrp.subclasses.pyfrp_mesh.mesh method)
plotFit() (pyfrp.subclasses.pyfrp_fit.fit method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
plotFitLikehoodProfiles() (in module pyfrp.modules.pyfrp_fit_module)
plotGeometry() (pyfrp.subclasses.pyfrp_geometry.geometry method)
plotICStack() (pyfrp.subclasses.pyfrp_simulation.simulation method)
plotLikehoodProfiles() (pyfrp.subclasses.pyfrp_fit.fit method)
plotMesh() (pyfrp.subclasses.pyfrp_mesh.mesh method)
plotRadialHist() (in module pyfrp.modules.pyfrp_img_module)
plotRadialProfile() (in module pyfrp.modules.pyfrp_img_module)
plotSim() (pyfrp.subclasses.pyfrp_ROI.ROI method)
plotSimConcProfile() (pyfrp.subclasses.pyfrp_ROI.ROI method)
plotSimPinned() (pyfrp.subclasses.pyfrp_ROI.ROI method)
plotSolStack() (pyfrp.subclasses.pyfrp_simulation.simulation method)
plotSolutionVariable() (in module pyfrp.modules.pyfrp_plot_module)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
plotTS() (in module pyfrp.modules.pyfrp_plot_module)
point_inside_polygon() (in module pyfrp.modules.pyfrp_zstack_module)
polyROI (class in pyfrp.subclasses.pyfrp_ROI)
polySliceROI (class in pyfrp.subclasses.pyfrp_ROI)
popRange() (in module pyfrp.modules.pyfrp_misc_module)
printAllAttr() (pyfrp.subclasses.pyfrp_analysis.analysis method)
(pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_fit.fit method)
(pyfrp.subclasses.pyfrp_mesh.mesh method)
(pyfrp.subclasses.pyfrp_simulation.simulation method)
printAllObjAttr() (in module pyfrp.modules.pyfrp_term_module)
printAttr() (in module pyfrp.modules.pyfrp_term_module)
printConfiguration() (pyfrp.subclasses.pyfrp_conf.configuration method)
printDetails() (pyfrp.subclasses.pyfrp_geometry.geometry method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
printDict() (in module pyfrp.modules.pyfrp_term_module)
printError() (in module pyfrp.modules.pyfrp_term_module)
printLoop() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
printNote() (in module pyfrp.modules.pyfrp_term_module)
printObjAttr() (in module pyfrp.modules.pyfrp_term_module)
printPaths() (in module pyfrp.modules.pyfrp_misc_module)
printProcess() (pyfrp.subclasses.pyfrp_analysis.analysis method)
printResults() (pyfrp.subclasses.pyfrp_fit.fit method)
(pyfrp.subclasses.pyfrp_molecule.molecule method)
printRsqByROI() (pyfrp.subclasses.pyfrp_fit.fit method)
printStats() (pyfrp.subclasses.pyfrp_mesh.mesh method)
printTable() (in module pyfrp.modules.pyfrp_term_module)
printWarning() (in module pyfrp.modules.pyfrp_term_module)
processImg() (in module pyfrp.modules.pyfrp_img_module)
pyfrp (module)
pyfrp.modules (module)
pyfrp.modules.pyfrp_fit_module (module)
pyfrp.modules.pyfrp_geometry_module (module)
pyfrp.modules.pyfrp_gmsh_geometry (module)
pyfrp.modules.pyfrp_gmsh_IO_module (module)
pyfrp.modules.pyfrp_gmsh_module (module)
pyfrp.modules.pyfrp_idx_module (module)
pyfrp.modules.pyfrp_img_module (module)
pyfrp.modules.pyfrp_integration_module (module)
pyfrp.modules.pyfrp_IO_module (module)
pyfrp.modules.pyfrp_misc_module (module)
pyfrp.modules.pyfrp_openscad_module (module)
pyfrp.modules.pyfrp_optimization_module (module)
pyfrp.modules.pyfrp_plot_module (module)
pyfrp.modules.pyfrp_sim_module (module)
pyfrp.modules.pyfrp_stats_module (module)
pyfrp.modules.pyfrp_term_module (module)
pyfrp.modules.pyfrp_vtk_module (module)
pyfrp.modules.pyfrp_zstack_module (module)
pyfrp.PyFRAP (module)
pyfrp.subclasses (module)
pyfrp.subclasses.pyfrp_analysis (module)
pyfrp.subclasses.pyfrp_conf (module)
pyfrp.subclasses.pyfrp_embryo (module)
pyfrp.subclasses.pyfrp_fit (module)
pyfrp.subclasses.pyfrp_geometry (module)
pyfrp.subclasses.pyfrp_mesh (module)
pyfrp.subclasses.pyfrp_molecule (module)
pyfrp.subclasses.pyfrp_ROI (module)
pyfrp.subclasses.pyfrp_simulation (module)
Q
quadOn() (pyfrp.subclasses.pyfrp_analysis.analysis method)
quickAnalysis() (pyfrp.subclasses.pyfrp_embryo.embryo method)
R
radialImgHist() (in module pyfrp.modules.pyfrp_img_module)
radialROI (class in pyfrp.subclasses.pyfrp_ROI)
radialSliceROI (class in pyfrp.subclasses.pyfrp_ROI)
rangeLists() (in module pyfrp.modules.pyfrp_misc_module)
readFieldLine() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
readGeoFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
(pyfrp.subclasses.pyfrp_geometry.geometry method)
readGeoLine() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
readParameter() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
readStlFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
rectangleROI (class in pyfrp.subclasses.pyfrp_ROI)
rectangleSliceROI (class in pyfrp.subclasses.pyfrp_ROI)
redraw() (in module pyfrp.modules.pyfrp_plot_module)
(pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
refine() (pyfrp.subclasses.pyfrp_mesh.mesh method)
refineInMeshByField() (pyfrp.subclasses.pyfrp_ROI.ROI method)
refineMsh() (in module pyfrp.modules.pyfrp_gmsh_module)
regions2quad() (in module pyfrp.modules.pyfrp_idx_module)
removeAllOccFromList() (in module pyfrp.modules.pyfrp_misc_module)
removeCommentFromFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
removeCorner() (pyfrp.subclasses.pyfrp_ROI.polyROI method)
removeDuplicateEdgeIDs() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
removeDuplicates() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
removeDuplicateVerticesIDs() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
removeEdgeByID() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
removeElementFromFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
removeEmbryo() (pyfrp.subclasses.pyfrp_molecule.molecule method)
removeFromAllLoops() (pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
removeFromAllSurfaces() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
removeFromSurface() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
removeListOfFiles() (in module pyfrp.modules.pyfrp_misc_module)
removeProcessStep() (pyfrp.subclasses.pyfrp_analysis.analysis method)
removeQuoteSignsFromString() (in module pyfrp.modules.pyfrp_misc_module)
removeROI() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_ROI.customROI method)
(pyfrp.subclasses.pyfrp_fit.fit method)
removeSurfaceByID() (pyfrp.modules.pyfrp_gmsh_geometry.surfaceLoop method)
removeTailingLines() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
remRepeatedImgIdxs() (in module pyfrp.modules.pyfrp_idx_module)
remRepeatsList() (in module pyfrp.modules.pyfrp_misc_module)
renameMeshFiles() (pyfrp.subclasses.pyfrp_embryo.embryo method)
render2Openscad() (pyfrp.subclasses.pyfrp_geometry.geometry method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
render2OpenscadInGeometry() (pyfrp.subclasses.pyfrp_ROI.ROI method)
render2Stl() (pyfrp.subclasses.pyfrp_geometry.geometry method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
render2StlInGeometry() (pyfrp.subclasses.pyfrp_ROI.ROI method)
renderVTK() (in module pyfrp.modules.pyfrp_vtk_module)
repairDefaultGeoFiles() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
replaceEmbryo() (pyfrp.subclasses.pyfrp_molecule.molecule method)
rerun() (pyfrp.subclasses.pyfrp_simulation.simulation method)
rerunReactDiff() (in module pyfrp.modules.pyfrp_sim_module)
reset2DefaultX0() (pyfrp.subclasses.pyfrp_fit.fit method)
resetDataVec() (pyfrp.subclasses.pyfrp_ROI.ROI method)
resetSimVec() (pyfrp.subclasses.pyfrp_ROI.ROI method)
restoreDefault() (pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
restoreDefaults() (pyfrp.subclasses.pyfrp_mesh.mesh method)
(pyfrp.subclasses.pyfrp_simulation.simulation method)
resultsToDict() (pyfrp.subclasses.pyfrp_fit.fit method)
resultsToVec() (pyfrp.subclasses.pyfrp_fit.fit method)
reverseEdge() (pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
ROI (class in pyfrp.subclasses.pyfrp_ROI)
roiIncluded() (pyfrp.subclasses.pyfrp_ROI.customROI method)
ROIs2Full() (pyfrp.subclasses.pyfrp_embryo.embryo method)
ROIs2Quad() (pyfrp.subclasses.pyfrp_embryo.embryo method)
rotateToNormal() (pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
rotateToPlane() (pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
rotateToSurface() (pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
Rsq() (in module pyfrp.modules.pyfrp_stats_module)
ruledSurface (class in pyfrp.modules.pyfrp_gmsh_geometry)
run() (OverrideInstall method)
(pyfrp.subclasses.pyfrp_analysis.analysis method)
(pyfrp.subclasses.pyfrp_fit.fit method)
(pyfrp.subclasses.pyfrp_simulation.simulation method)
runBruteInit() (pyfrp.subclasses.pyfrp_fit.fit method)
runFijiMacro() (in module pyfrp.modules.pyfrp_img_module)
runFiPyMeshGenerator() (pyfrp.subclasses.pyfrp_mesh.mesh method)
runGmsh() (in module pyfrp.modules.pyfrp_gmsh_module)
runOpenscad() (in module pyfrp.modules.pyfrp_openscad_module)
S
save() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
(pyfrp.subclasses.pyfrp_conf.configuration method)
(pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_molecule.molecule method)
saveExtract() (pyfrp.subclasses.pyfrp_molecule.molecule method)
saveImg() (in module pyfrp.modules.pyfrp_img_module)
saveMeshToImg() (pyfrp.subclasses.pyfrp_mesh.mesh method)
saveMeshToPS() (pyfrp.subclasses.pyfrp_mesh.mesh method)
saveToPickle() (in module pyfrp.modules.pyfrp_IO_module)
scaleROIs() (in module pyfrp.modules.pyfrp_fit_module)
scaleTime() (in module pyfrp.modules.pyfrp_fit_module)
scaleToEnc() (in module pyfrp.modules.pyfrp_img_module)
selectDataByOverlapSubSample() (in module pyfrp.modules.pyfrp_stats_module)
set3DAxesEqual() (in module pyfrp.modules.pyfrp_plot_module)
setAddRimImg() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setAllROI() (pyfrp.subclasses.pyfrp_geometry.geometry method)
setAnnOffset() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
setAsBkgdField() (pyfrp.modules.pyfrp_gmsh_geometry.field method)
setBackup2File() (pyfrp.subclasses.pyfrp_conf.configuration method)
setBackup2Memory() (pyfrp.subclasses.pyfrp_conf.configuration method)
setBkgd() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setBleachedROI() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setBruteInitD() (pyfrp.subclasses.pyfrp_fit.fit method)
setCenter() (pyfrp.subclasses.pyfrp_geometry.geometry method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
setColor() (pyfrp.subclasses.pyfrp_ROI.ROI method)
setConcRim() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setCorners() (pyfrp.subclasses.pyfrp_ROI.polyROI method)
setCutOffT() (pyfrp.subclasses.pyfrp_fit.fit method)
setD() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setDataEnc() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setDataFolder() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setDataFT() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setDataOffset() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setDataResMu() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setDataResPx() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setDataVec() (pyfrp.subclasses.pyfrp_ROI.ROI method)
setDegr() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setDomain() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
setDomainForElementType() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
setDomainGlobally() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
setEmbryo2Full() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setEmbryo2Quad() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setEqu() (pyfrp.subclasses.pyfrp_fit.fit method)
setExePath() (OverrideInstall method)
setFieldAttr() (pyfrp.modules.pyfrp_gmsh_geometry.attractorField method)
(pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
(pyfrp.modules.pyfrp_gmsh_geometry.field method)
(pyfrp.modules.pyfrp_gmsh_geometry.minField method)
setFieldAttributes() (pyfrp.modules.pyfrp_gmsh_geometry.field method)
setFijiPath() (OverrideInstall method)
setFileList() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setFitCutOffT() (pyfrp.subclasses.pyfrp_fit.fit method)
setFitDegr() (pyfrp.subclasses.pyfrp_fit.fit method)
setFitPinned() (pyfrp.subclasses.pyfrp_fit.fit method)
setFitProd() (pyfrp.subclasses.pyfrp_fit.fit method)
setFlatten() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setFlipBeforeProcess() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setFnBkgd() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setFnFlatten() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setFnGeo() (pyfrp.subclasses.pyfrp_geometry.geometry method)
setFnMesh() (pyfrp.subclasses.pyfrp_mesh.mesh method)
setFnPre() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setFrameInterval() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setFromFile() (pyfrp.subclasses.pyfrp_mesh.mesh method)
setGaussian() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setGaussianSigma() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setGeometry2Ball() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setGeometry2BallQuad() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setGeometry2Cone() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setGeometry2Custom() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setGeometry2Cylinder() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setGeometry2CylinderQuad() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setGeometry2ZebraFishDomeStage() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setGeometry2ZebraFishDomeStageQuad() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setGlobalVolSize() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
setGmshPath() (OverrideInstall method)
setHeight() (pyfrp.subclasses.pyfrp_geometry.cone method)
(pyfrp.subclasses.pyfrp_ROI.sliceROI method)
(pyfrp.subclasses.pyfrp_geometry.cylinder method)
setICimg() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setICimgByFn() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setICMode() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setID() (pyfrp.modules.pyfrp_gmsh_geometry.gmshElement method)
setId() (pyfrp.subclasses.pyfrp_ROI.ROI method)
setImagingHeight() (pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
setImagingRadius() (pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
setIterations() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setKineticTimeScale() (pyfrp.subclasses.pyfrp_fit.fit method)
setLBD() (pyfrp.subclasses.pyfrp_fit.fit method)
setLBDegr() (pyfrp.subclasses.pyfrp_fit.fit method)
setLBProd() (pyfrp.subclasses.pyfrp_fit.fit method)
setLowerRadius() (pyfrp.subclasses.pyfrp_geometry.cone method)
setMasterROIIdx() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setMaxfun() (pyfrp.subclasses.pyfrp_fit.fit method)
setMedian() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setMedianRadius() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setMesh() (pyfrp.subclasses.pyfrp_mesh.mesh method)
(pyfrp.subclasses.pyfrp_simulation.simulation method)
setName() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
(pyfrp.subclasses.pyfrp_fit.fit method)
(pyfrp.subclasses.pyfrp_molecule.molecule method)
setNBkgd() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setNFlatten() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setNFrames() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setNorm() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setNPre() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setOffset() (pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
setOptMeth() (pyfrp.subclasses.pyfrp_fit.fit method)
setOptTol() (pyfrp.subclasses.pyfrp_fit.fit method)
setOuterRadius() (pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
setPath() (in module pyfrp.modules.pyfrp_misc_module)
setPathFile() (pyfrp.subclasses.pyfrp_conf.configuration method)
setPlotHidden() (pyfrp.subclasses.pyfrp_conf.configuration method)
setProcess() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setProd() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setPropHidden() (pyfrp.subclasses.pyfrp_conf.configuration method)
setPubAxis() (in module pyfrp.modules.pyfrp_plot_module)
setPubFigSize() (in module pyfrp.modules.pyfrp_plot_module)
setQuad() (pyfrp.subclasses.pyfrp_analysis.analysis method)
setRadius() (pyfrp.subclasses.pyfrp_geometry.cylinder method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
setRadiusScale() (pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
setRange() (pyfrp.modules.pyfrp_gmsh_geometry.boxField method)
setRecentFiles() (pyfrp.subclasses.pyfrp_conf.configuration method)
setROIsIncluded() (pyfrp.subclasses.pyfrp_ROI.customROI method)
setSaveSim() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setSaveTrack() (pyfrp.subclasses.pyfrp_fit.fit method)
setSideLength() (pyfrp.subclasses.pyfrp_ROI.squareROI method)
setSideLengthBleachedMu() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setSideLengthX() (pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
setSideLengthY() (pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
setSimVec() (pyfrp.subclasses.pyfrp_ROI.ROI method)
setSliceBottom() (pyfrp.subclasses.pyfrp_ROI.sliceROI method)
setSliceDepthMu() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setSolver() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setTEnd() (pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_simulation.simulation method)
setTermHidden() (pyfrp.subclasses.pyfrp_conf.configuration method)
setTimesteps() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setTolerance() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setTStart() (pyfrp.subclasses.pyfrp_embryo.embryo method)
setUBD() (pyfrp.subclasses.pyfrp_fit.fit method)
setUBDegr() (pyfrp.subclasses.pyfrp_fit.fit method)
setUBProd() (pyfrp.subclasses.pyfrp_fit.fit method)
setUpperRadius() (pyfrp.subclasses.pyfrp_geometry.cone method)
setUseForRim() (pyfrp.subclasses.pyfrp_ROI.ROI method)
setValOut() (pyfrp.subclasses.pyfrp_simulation.simulation method)
setVolSizePx() (pyfrp.subclasses.pyfrp_mesh.mesh method)
setWidth() (pyfrp.subclasses.pyfrp_ROI.sliceROI method)
setX() (pyfrp.modules.pyfrp_gmsh_geometry.vertex method)
setX0() (pyfrp.subclasses.pyfrp_fit.fit method)
setX0D() (pyfrp.subclasses.pyfrp_fit.fit method)
setX0Degr() (pyfrp.subclasses.pyfrp_fit.fit method)
setX0Equ() (pyfrp.subclasses.pyfrp_fit.fit method)
setX0Prod() (pyfrp.subclasses.pyfrp_fit.fit method)
setZExtend() (pyfrp.subclasses.pyfrp_ROI.ROI method)
showAllROIBoundaries() (pyfrp.subclasses.pyfrp_embryo.embryo method)
showAllROIIdxs() (pyfrp.subclasses.pyfrp_embryo.embryo method)
showBoundary() (pyfrp.subclasses.pyfrp_ROI.customROI method)
(pyfrp.subclasses.pyfrp_ROI.polyROI method)
(pyfrp.subclasses.pyfrp_ROI.radialROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleROI method)
(pyfrp.subclasses.pyfrp_ROI.squareROI method)
showDataImg() (pyfrp.subclasses.pyfrp_embryo.embryo method)
showExtImgIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
showFirstDataImg() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
showIC() (pyfrp.subclasses.pyfrp_simulation.simulation method)
showICimg() (pyfrp.subclasses.pyfrp_simulation.simulation method)
showIdxs() (pyfrp.subclasses.pyfrp_ROI.ROI method)
showImg() (pyfrp.modules.pyfrp_plot_module.FRAPBoundarySelector method)
showImgAndHist() (in module pyfrp.modules.pyfrp_img_module)
showImgIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
showInterpolatedIC() (pyfrp.subclasses.pyfrp_simulation.simulation method)
showInterpolatedICImg() (pyfrp.subclasses.pyfrp_simulation.simulation method)
showMeshIdx() (pyfrp.subclasses.pyfrp_ROI.ROI method)
showMeshIdx2D() (pyfrp.subclasses.pyfrp_ROI.ROI method)
sigmoidBleachingFct() (in module pyfrp.modules.pyfrp_sim_module)
simpleHist() (in module pyfrp.modules.pyfrp_misc_module)
simplifySurfaces() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
simulateReactDiff() (in module pyfrp.modules.pyfrp_sim_module)
simulation (class in pyfrp.subclasses.pyfrp_simulation)
slashToFn() (in module pyfrp.modules.pyfrp_misc_module)
sliceEmbryo() (pyfrp.subclasses.pyfrp_embryo.embryo method)
sliceROI (class in pyfrp.subclasses.pyfrp_ROI)
sortImageFiles() (in module pyfrp.modules.pyfrp_misc_module)
sortKeysByLength() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
sortListsWithKey() (in module pyfrp.modules.pyfrp_misc_module)
splitLine() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
squareROI (class in pyfrp.subclasses.pyfrp_ROI)
squareSliceROI (class in pyfrp.subclasses.pyfrp_ROI)
str2list() (in module pyfrp.modules.pyfrp_misc_module)
substractBkgd() (in module pyfrp.modules.pyfrp_img_module)
substractROIs() (pyfrp.subclasses.pyfrp_ROI.customROI method)
sumUpResults() (pyfrp.subclasses.pyfrp_molecule.molecule method)
surfaceLoop (class in pyfrp.modules.pyfrp_gmsh_geometry)
symmetryTest() (in module pyfrp.modules.pyfrp_img_module)
T
thresholdField (class in pyfrp.modules.pyfrp_gmsh_geometry)
toDefaultTvec() (pyfrp.subclasses.pyfrp_simulation.simulation method)
toLinearTimeScale() (pyfrp.subclasses.pyfrp_simulation.simulation method)
toLogTimeScale() (pyfrp.subclasses.pyfrp_simulation.simulation method)
transformX0() (in module pyfrp.modules.pyfrp_optimization_module)
translateNPFloat() (in module pyfrp.modules.pyfrp_misc_module)
triangulatePoly() (in module pyfrp.modules.pyfrp_idx_module)
turnAxesForPub() (in module pyfrp.modules.pyfrp_plot_module)
txtLineReplace() (in module pyfrp.modules.pyfrp_misc_module)
U
unflipQuad() (in module pyfrp.modules.pyfrp_img_module)
unzipLists() (in module pyfrp.modules.pyfrp_misc_module)
updateBallGeo() (in module pyfrp.modules.pyfrp_gmsh_module)
updateBleachedRegion() (pyfrp.subclasses.pyfrp_embryo.embryo method)
updateConeGeo() (in module pyfrp.modules.pyfrp_gmsh_module)
updateCylinderGeo() (in module pyfrp.modules.pyfrp_gmsh_module)
updateDomeGeo() (in module pyfrp.modules.pyfrp_gmsh_module)
updateFileList() (pyfrp.subclasses.pyfrp_embryo.embryo method)
updateGeoFile() (pyfrp.subclasses.pyfrp_geometry.cone method)
(pyfrp.subclasses.pyfrp_geometry.cylinder method)
(pyfrp.subclasses.pyfrp_geometry.xenopusBall method)
(pyfrp.subclasses.pyfrp_geometry.zebrafishDomeStage method)
(pyfrp.subclasses.pyfrp_mesh.mesh method)
updateIdxs() (pyfrp.subclasses.pyfrp_ROI.customROI method)
updateNFrames() (pyfrp.subclasses.pyfrp_embryo.embryo method)
updateObj() (in module pyfrp.modules.pyfrp_misc_module)
updateParmGeoFile() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
updateProcess() (pyfrp.subclasses.pyfrp_analysis.analysis method)
updatePxDimensions() (pyfrp.subclasses.pyfrp_embryo.embryo method)
updateTimeDimensions() (pyfrp.subclasses.pyfrp_embryo.embryo method)
updateTvec() (pyfrp.subclasses.pyfrp_simulation.simulation method)
updateVersion() (pyfrp.subclasses.pyfrp_conf.configuration method)
(pyfrp.subclasses.pyfrp_embryo.embryo method)
(pyfrp.subclasses.pyfrp_fit.fit method)
(pyfrp.subclasses.pyfrp_molecule.molecule method)
(pyfrp.subclasses.pyfrp_simulation.simulation method)
updateVolSizeGeo() (in module pyfrp.modules.pyfrp_gmsh_module)
useAIC() (in module pyfrp.modules.pyfrp_stats_module)
V
vars2dict() (in module pyfrp.modules.pyfrp_misc_module)
vertex (class in pyfrp.modules.pyfrp_gmsh_geometry)
verticesCoordsToList() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
volume (class in pyfrp.modules.pyfrp_gmsh_geometry)
W
win2linPath() (in module pyfrp.modules.pyfrp_misc_module)
writeAttractorField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeBackgroundField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeBoundaryLayerField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeBoxField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeComment() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeElements() (pyfrp.modules.pyfrp_gmsh_geometry.domain method)
writeFieldProp() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeFieldPropByDict() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeMergeLine() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeMinField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeTableToCSV() (in module pyfrp.modules.pyfrp_IO_module)
writeThresholdField() (in module pyfrp.modules.pyfrp_gmsh_IO_module)
writeToFile() (pyfrp.modules.pyfrp_gmsh_geometry.arc method)
(pyfrp.modules.pyfrp_gmsh_geometry.attractorField method)
(pyfrp.modules.pyfrp_gmsh_geometry.bSpline method)
(pyfrp.modules.pyfrp_gmsh_geometry.boundaryLayerField method)
(pyfrp.modules.pyfrp_gmsh_geometry.boxField method)
(pyfrp.modules.pyfrp_gmsh_geometry.domain method)
(pyfrp.modules.pyfrp_gmsh_geometry.line method)
(pyfrp.modules.pyfrp_gmsh_geometry.lineLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.minField method)
(pyfrp.modules.pyfrp_gmsh_geometry.ruledSurface method)
(pyfrp.modules.pyfrp_gmsh_geometry.surfaceLoop method)
(pyfrp.modules.pyfrp_gmsh_geometry.thresholdField method)
(pyfrp.modules.pyfrp_gmsh_geometry.vertex method)
(pyfrp.modules.pyfrp_gmsh_geometry.volume method)
writeToGeoFile() (pyfrp.subclasses.pyfrp_ROI.polySliceROI method)
(pyfrp.subclasses.pyfrp_ROI.ROI method)
(pyfrp.subclasses.pyfrp_ROI.radialSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.rectangleSliceROI method)
(pyfrp.subclasses.pyfrp_ROI.squareSliceROI method)
writeVTKFile() (pyfrp.subclasses.pyfrp_mesh.mesh method)
X
xenopusBall (class in pyfrp.subclasses.pyfrp_geometry)
xenopusBallQuad (class in pyfrp.subclasses.pyfrp_geometry)
xTransform() (in module pyfrp.modules.pyfrp_optimization_module)
Z
zebrafishDomeStage (class in pyfrp.subclasses.pyfrp_geometry)
zebrafishDomeStageQuad (class in pyfrp.subclasses.pyfrp_geometry)
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